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Skup podataka sa Zenodo · Fernando Soares Costa, Marcos

AnnoTEP-DB (Annotation of Transposable Elements in Plants Database - Frozen Release, v1.0): A Precomputed Repository for Lineage-Level Plant Transposable Elements Annotation

Otvori na Zenodo
Licenca
CC BY 4.0dozvoljena komercijalna upotrebaTekst licence
Licenca dozvoljava komercijalnu upotrebu. Obično treba navesti autora — tačni uslovi su u tekstu licence.
Formati
7Z, GZ
Veličina
46 GB
Ažurirano
2. 12. 2025.

Opis

AnnoTEP-DB (Frozen Release, v1.0): A Precomputed Repository for Lineage-Level Plant Transposable Elements Annotation This Zenodo record provides a frozen, versioned snapshot of the AnnoTEP-DB resource — a comprehensive database of precomputed transposable element (TE) annotations and lineage-level classifications originally spanning 75 plant and algal genomes. The full database (≈650 GB) exceeds Zenodo's 50 GB per-record storage limit. Therefore, this deposit includes a curated subset of representative genome-level archives , selected from the full collection to maximize phylogenetic diversity and ensure reproducibility of the main AnnoTEP-DB features. The database was generated using the EDTA-GUI pipeline integrated with REXdb and RepeatModeler2, enabling lineage-aware TE classification, visualization, and comparative exploration across major plant clades. To ensure long-term accessibility and reproducibility, the resource was restructured into two components: AnnoTEP-DB-Interface.tar.gz — the complete interactive web interface (HTML, PHP, JavaScript, DataTables) required to deploy or browse AnnoTEP-DB locally; Selected genome-level archives (.7z) — each…

Opis sa Zenodo, skraćen.

Fajlovi (32)

  • 7ZO_sativa.7z1,2 GB
  • 7ZT_cacao.7z1 GB
  • 7ZU_gibba.7z147 MB
  • 7ZC_reinhardtii.7z111 MB
  • 7ZA_comosus.7z1,3 GB
  • 7ZA_thaliana.7z136 MB
  • 7ZA_lyrata.7z362 MB
  • —Z_mays.7z.part_aa3,6 GB
  • —Z_mays.7z.part_ab3,6 GB
  • 7ZE_grandis.7z2 GB
  • 7ZN_nucifera.7z3,1 GB
  • 7ZA_filiculoides.7z2,4 GB
  • 7ZV_vinifera.7z1,4 GB
  • —Z_mays.7z.part_ac3,2 GB
  • 7ZF_x_ananassa.7z2,1 GB
  • 7ZG_max.7z3,3 GB
  • 7ZS_lycopersicum.7z3,4 GB
  • 7ZP_guajava.7z1,4 GB
  • 7ZS_moellendorffii.7z518 MB
  • 7ZP_persica.7z497 MB
  • 7ZS_tropicum.7z150 MB
  • 7ZZ_marina.7z985 MB
  • 7ZS_purpurea.7z827 MB
  • 7ZM_polymorpha.7z321 MB
  • 7ZC_sinensis.7z1,6 GB
  • 7ZJ_regia.7z1,8 GB
  • 7ZB_oleracea.7z1 GB
  • 7ZS_arvensis.7z1,4 GB
  • 7ZP_trichocarpa.7z1 GB
  • 7ZB_distachyon.7z668 MB
  • GZAnnoTEP-DB-Interface.tar.gz269 MB
  • 7ZT_grandiflorum174.7z1,4 GB

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