Dataset from Zenodo · Chi-Jane Chen
single cell dataset for covid
- License
- CC BY 4.0commercial use allowedLicense text
- This license allows commercial use. Usually you must credit the author; read the license for the exact terms.
- Formats
- CSV, XLSX
- Size
- 2.6 GB
- Updated
- Jun 30, 2022
Description
The dataset is covid with data preprocessing. The covid dataset contains 65 million cells from 49 patients, out of which there were six healthy subjects, 23 mild cases of COVID, and 20 severe conditions under ICU care. For data pre-processing in the covid dataset, we collected the data for each experimental condition and removed unnamed proteins (columns with blank titles). We selected the remaining protein features and the entire cell population in the dataset. However, some genes are expressed as negative values in raw data; hence, we set every negative number to 0. Finally, the ward cases and ICU cases total contain 43 patients with 23 features.
Description from Zenodo, shortened.
Files (51)
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_025_O ST3 230420_004_Live_cells.fcs.csv6.4 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_HC_008 ST3 230420_013_Live_cells.fcs.csv123 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_029_O ST3 230420_002_Live_cells.fcs.csv5.6 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_026_O ST3 230420_003_Live_cells.fcs.csv34 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_031_A ST3 210420_055_Live_cells.fcs.csv15 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_014_O ST3 230420_029_Live_cells.fcs.csv40 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_HC_009 ST3 230420_012_Live_cells.fcs.csv102 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_W_033_O ST3 210420_036_Live_cells.fcs.csv150 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_043_A ST3 210420_049_Live_cells.fcs.csv25 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_029_A ST3 210420_059_Live_cells.fcs.csv76 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_014_A ST3 210420_073_Live_cells.fcs.csv70 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_005_A ST3 210420_080_Live_cells.fcs.csv1.1 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_017_O ST3 230420_026_Live_cells.fcs.csv76 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_015_A ST3 210420_069_Live_cells.fcs.csv6.4 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_ICU_changedW_004_O ST3 230420_036_Live_cells.fcs.csv8.5 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_changedW_036_O ST3 210420_035_Live_cells.fcs.csv56 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_W_042_O ST3 210420_032_Live_cells.fcs.csv97 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_changedW_027_O ST3 210420_039_Live_cells.fcs.csv1.9 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_changedW_019_O ST3 210420_040_Live_cells.fcs.csv6.8 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_027_A ST3 210420_061_Live_cells.fcs.csv135 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_ICU_012_A ST3 230420_043_Live_cells.fcs.csv12 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_W_043_O ST3 210420_031_Live_cells.fcs.csv100 MB
- XLSXcovid_dataset.xlsx9.8 kB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_022_O ST3 230420_006_Live_cells.fcs.csv79 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_changedW_002_O ST3 210420_043_Live_cells.fcs.csv71 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_011_O ST3 230420_032_Live_cells.fcs.csv5.6 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_ICU_003_A ST3 230420_049_Live_cells.fcs.csv4.5 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_046_O ST3 230420_011_Live_cells.fcs.csv51 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_ICU_006_A ST3 230420_046_Live_cells.fcs.csv7.1 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_018_O ST3 230420_025_Live_cells.fcs.csv139 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_013_A ST3 210420_078_Live_cells.fcs.csv7.6 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_045_A ST3 210420_045_Live_cells.fcs.csv67 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_020_O ST3 230420_007_Live_cells.fcs.csv110 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_039_A ST3 210420_051_Live_cells.fcs.csv32 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_012_O ST3 230420_031_Live_cells.fcs.csv9.2 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_HC_006 ST3 230420_015_Live_cells.fcs.csv128 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_024_O ST3 230420_005_Live_cells.fcs.csv283 kB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_016_O ST3 230420_027_Live_cells.fcs.csv7 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_ICU_002_A ST3 230420_052_Live_cells.fcs.csv773 kB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_023_A ST3 210420_064_Live_cells.fcs.csv57 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_048_O ST3 230420_010_Live_cells.fcs.csv150 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_HC_001 ST3 230420_017_Live_cells.fcs.csv129 MB
- CSVcovid_dataset.csv4.5 kB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_HC_007 ST3 230420_014_Live_cells.fcs.csv75 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_001_O ST3 230420_037_Live_cells.fcs.csv11 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_010_O ST3 230420_033_Live_cells.fcs.csv63 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_W_015_O ST3 230420_028_Live_cells.fcs.csv28 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_HC_005 ST3 230420_016_Live_cells.fcs.csv149 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_ICU_025_A ST3 230420_039_Live_cells.fcs.csv4.1 MB
- CSVexport_COVID19 samples 21_04_20_ST3_COVID19_ICU_036_A ST3 210420_053_Live_cells.fcs.csv111 MB
- CSVexport_COVID19 samples 23_04_20_ST3_COVID19_ICU_changedW_049_O ST3 230420_009_Live_cells.fcs.csv24 MB
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