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Dataset de Zenodo · Pyron, Robert

TetrapodTrees Database: Anthropocene Imperilment of Ancient Diversity and Evolutionary Potential in Terrestrial Vertebrates

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Licencia
CC BY 4.0uso comercial permitidoTexto de la licencia
Esta licencia permite el uso comercial. Normalmente hay que citar al autor; consulta la licencia para ver las condiciones exactas.
Formatos
CSV, R, ZIP, TRE
Tamaño
6,8 GB
Actualizado
26 sept 2025

Descripción

Zenodo Readme – TetrapodTrees Database The data products here are described in the preprint "Anthropocene Imperilment of Ancient Diversity and Evolutionary Potential in Terrestrial Vertebrates." Figure tree - this is a single randomly chosen tree that was used for illustration purposes in the main MS and can be used for your own quick testing and analyses: tetrapoda 1.0 33281 full.1.tre Tetrapod trees – these files contain the full 10,000 trees with 33,281 species, broken up into 10 sets of 1,000 trees: tetrapoda 1.0 33281 full.1000.trees.zip tetrapoda 1.0 33281 full.2000.trees.zip tetrapoda 1.0 33281 full.3000.trees.zip tetrapoda 1.0 33281 full.4000.trees.zip tetrapoda 1.0 33281 full.5000.trees.zip tetrapoda 1.0 33281 full.6000.trees.zip tetrapoda 1.0 33281 full.7000.trees.zip tetrapoda 1.0 33281 full.8000.trees.zip tetrapoda 1.0 33281 full.9000.trees.zip tetrapoda 1.0 33281 full.10000.trees.zip Mammal trees – these 10,000 mammal trees were re-estimated using the methods described by Upham et al. (2019) with extinctionpr = fixed(0) to equal a Yule (i.e., pure-birth) process. These trees were used to create TetrapodTrees. MamPhy fullPosterior PureBirth vr…

Descripción de Zenodo, abreviada.

Archivos (19)

  • CSVtrees.sample.csv355 kB
  • CSVmamm_tax.csv358 kB
  • CSVtetrapod_groups.csv989 kB
  • CSVtipRate_SUMMARY-ED_all10ktrees_tetrapoda_1.0_33281_full.csv7,9 MB
  • R_tetrapod_1.0.R22 kB
  • R_Tetrapoda_tipFP_forHPC_v2.R12 kB
  • ZIPtetrapoda_1.0_33281_full.5000.trees.zip614 MB
  • CSVtipRate_SUMMARY-DR_all10ktrees_tetrapoda_1.0_33281_full.csv8,4 MB
  • ZIPMamPhy_fullPosterior_PureBirth_vr_Completed_5911sp_topoCons_NDexp_all10k_v2_nexus.trees.zip774 MB
  • ZIPtetrapoda_1.0_33281_full.3000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.8000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.2000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.9000.trees.zip614 MB
  • TREtetrapoda_1.0_33281_full.1.tre1,5 MB
  • ZIPtetrapoda_1.0_33281_full.1000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.4000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.6000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.10000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.7000.trees.zip614 MB

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