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Skup podataka sa Zenodo · Pyron, Robert

TetrapodTrees Database: Anthropocene Imperilment of Ancient Diversity and Evolutionary Potential in Terrestrial Vertebrates

Otvori na Zenodo
Licenca
CC BY 4.0dozvoljena komercijalna upotrebaTekst licence
Licenca dozvoljava komercijalnu upotrebu. Obično treba navesti autora — tačni uslovi su u tekstu licence.
Formati
CSV, R, ZIP, TRE
Veličina
6,8 GB
Ažurirano
26. 9. 2025.

Opis

Zenodo Readme – TetrapodTrees Database The data products here are described in the preprint "Anthropocene Imperilment of Ancient Diversity and Evolutionary Potential in Terrestrial Vertebrates." Figure tree - this is a single randomly chosen tree that was used for illustration purposes in the main MS and can be used for your own quick testing and analyses: tetrapoda 1.0 33281 full.1.tre Tetrapod trees – these files contain the full 10,000 trees with 33,281 species, broken up into 10 sets of 1,000 trees: tetrapoda 1.0 33281 full.1000.trees.zip tetrapoda 1.0 33281 full.2000.trees.zip tetrapoda 1.0 33281 full.3000.trees.zip tetrapoda 1.0 33281 full.4000.trees.zip tetrapoda 1.0 33281 full.5000.trees.zip tetrapoda 1.0 33281 full.6000.trees.zip tetrapoda 1.0 33281 full.7000.trees.zip tetrapoda 1.0 33281 full.8000.trees.zip tetrapoda 1.0 33281 full.9000.trees.zip tetrapoda 1.0 33281 full.10000.trees.zip Mammal trees – these 10,000 mammal trees were re-estimated using the methods described by Upham et al. (2019) with extinctionpr = fixed(0) to equal a Yule (i.e., pure-birth) process. These trees were used to create TetrapodTrees. MamPhy fullPosterior PureBirth vr…

Opis sa Zenodo, skraćen.

Fajlovi (19)

  • CSVtrees.sample.csv355 kB
  • CSVmamm_tax.csv358 kB
  • CSVtetrapod_groups.csv989 kB
  • CSVtipRate_SUMMARY-ED_all10ktrees_tetrapoda_1.0_33281_full.csv7,9 MB
  • R_tetrapod_1.0.R22 kB
  • R_Tetrapoda_tipFP_forHPC_v2.R12 kB
  • ZIPtetrapoda_1.0_33281_full.5000.trees.zip614 MB
  • CSVtipRate_SUMMARY-DR_all10ktrees_tetrapoda_1.0_33281_full.csv8,4 MB
  • ZIPMamPhy_fullPosterior_PureBirth_vr_Completed_5911sp_topoCons_NDexp_all10k_v2_nexus.trees.zip774 MB
  • ZIPtetrapoda_1.0_33281_full.3000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.8000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.2000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.9000.trees.zip614 MB
  • TREtetrapoda_1.0_33281_full.1.tre1,5 MB
  • ZIPtetrapoda_1.0_33281_full.1000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.4000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.6000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.10000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.7000.trees.zip614 MB

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