Skup podataka sa Zenodo · William R. Pearson
CPBI_seqdb_demo sample QFO sequence library
- Licenca
- CC BY 4.0dozvoljena komercijalna upotrebaTekst licence
- Licenca dozvoljava komercijalnu upotrebu. Obično treba navesti autora — tačni uslovi su u tekstu licence.
- Formati
- GZ
- Veličina
- 306 MB
- Ažurirano
- 21. 1. 2020.
Opis
A medium-sized (approx 1 million entry) protein sequence database constructed from the NCBI 'nr' (Jan, 2017) database selecting Uniprot (SwissProt), RefSeq, and PDB entries for 66 species (taxon id's) from the Quest for Orthologs organism set. These files are designed to be used in conjunction with scripts and SQL files to construct the seqdb demo database, as described in a Current Protocols in Bioinformatics Unit 3.9 revised Spring, 2017. The files are: qfo demo.gz - a fasta-format sequence library with the curren NR Defline format (gzip compressed) qfo prot.accession2taxonid.gz, qfo pdb.accession2taxid.gz- tables that map accessions to taxon id's and gi-numbers, similar to that available in the NCBI pub/taxonomy/accession2taxid/prot.accession2taxid and pdb.accession2taxid files (gzip compressed).
Opis sa Zenodo, skraćen.
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