Dataset from Zenodo · William R. Pearson
CPBI_seqdb_demo sample QFO sequence library
- License
- CC BY 4.0commercial use allowedLicense text
- This license allows commercial use. Usually you must credit the author; read the license for the exact terms.
- Formats
- GZ
- Size
- 306 MB
- Updated
- Jan 21, 2020
Description
A medium-sized (approx 1 million entry) protein sequence database constructed from the NCBI 'nr' (Jan, 2017) database selecting Uniprot (SwissProt), RefSeq, and PDB entries for 66 species (taxon id's) from the Quest for Orthologs organism set. These files are designed to be used in conjunction with scripts and SQL files to construct the seqdb demo database, as described in a Current Protocols in Bioinformatics Unit 3.9 revised Spring, 2017. The files are: qfo demo.gz - a fasta-format sequence library with the curren NR Defline format (gzip compressed) qfo prot.accession2taxonid.gz, qfo pdb.accession2taxid.gz- tables that map accessions to taxon id's and gi-numbers, similar to that available in the NCBI pub/taxonomy/accession2taxid/prot.accession2taxid and pdb.accession2taxid files (gzip compressed).
Description from Zenodo, shortened.
Files (3)
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