DH{}DataHunter

Dataset from Zenodo · Silva, Saura

The terrestrial carnivorous plant Utricularia reniformis sheds light on environmental and life-form genome plasticity: Annotation, Gene Ontology and raw data

Open on Zenodo
License
CC BY 4.0commercial use allowedLicense text
This license allows commercial use. Usually you must credit the author; read the license for the exact terms.
Formats
FASTA, CDS, CDNA, ZIP, FA, SQL
Size
3.1 GB
Updated
Oct 15, 2020

Description

Description: In this work, we deeply sequenced (genome and transcriptome of different organs), assembled, and analyzed the 311-Mbp genome of the terrestrial carnivorous plant U. reniformis (Lentibulariaceae). This project presents great importance to the understanding of genomic, evolutive and functional aspects of U. reniformis , which may, with the next-generation sequencing and computational biology approaches shed light to a better understanding not only for the biology and evolution of Utricularia genus, but also for other genera and lineages of the Lentibulariaceae family. Here we present all the raw data generated, including annotation and gene ontology files. External Information Genome Browser avaliable at CoGe Portal (https://genomevolution.org/coge/GenomeInfo.pl?gid=54799) GenBank Bioproject (https://www.ncbi.nlm.nih.gov/bioproject/290588) for raw genomic and transcriptomic reads FAPESP grant website contaning the project abstract and other information. Papers published related to Utricularia reniformis genome [1] Silva SR, Diaz YC, Penha HA, Pinheiro DG, Fernandes CC, Miranda VF, MichaelTP, Varani AM. The Chloroplast Genome of Utricularia reniformis Sheds Light on the…

Description from Zenodo, shortened.

Files (64)

  • FASTAUrenif-RNAseq-assembled.fasta343 MB
  • —ProcessRepeats_mod349 kB
  • FASTAUrenif-PASA-assemblies.fasta71 MB
  • CDSUrenif.CDS48 MB
  • —Ur.collinearity483 kB
  • CDNAUrenif.cDNA48 MB
  • ZIPCEGs.zip1.3 MB
  • FAUgibba_TEs_DANTE_2019.fa9 MB
  • FAUrenif-softmasked.fa296 MB
  • SQLANNOT-vFinal.sql54 MB
  • TXTUgibba_WEGO.txt1.7 MB
  • FAUrenif_TEs_DANTE_2019.fa38 MB
  • TXTUrenif_WEGO.txt3 MB
  • ANNOTUrenif_annot-noclean.annot9.6 MB
  • GFFUrenif-RepeatMasker.gff27 MB
  • FAUrenif-no-masked.fa295 MB
  • —Ur.gene_type1.5 MB
  • TANDEMUr.tandem126 kB
  • TANDEMUg.tandem42 kB
  • BOXurenif_nogs_emapper_annotations.box7.1 MB
  • TXTUrenif_GOStat.txt1.7 MB
  • GENEUrenif.gene77 MB
  • TXTUrenif_GAF.txt24 MB
  • FAUgibba-softmasked.fa98 MB
  • FASTAUgibba-RNAseq-assembled.fasta222 MB
  • GFF3Ugibba-RepeatMasker-v2.gff33.8 MB
  • GFF3Urenif-RepeatMasker.gff327 MB
  • TBLUgibba-RepeatMasker.tbl3 kB
  • GFF3Ugibba-RepeatMasker.gff33.4 MB
  • GFFUgibba-RepeatMasker.gff3.5 MB
  • TBLUrenif-RepeatMasker.tbl3 kB
  • PROTUgibba.prot12 MB
  • TXTUrenif_export.txt15 MB
  • GFF3Urenif-EVM.all-no-TEs-PASA-ANNOTATED.gff3104 MB
  • FASTAUrenif_fasta.fasta19 MB
  • GFF3Urenif-EVM.all-no-TEs-PASA.gff3105 MB
  • GFF3Urenif-RepeatMasker-v2.gff328 MB
  • STATSUgibba-PASA.stats2.9 kB
  • FASTAUgibba-PASA-assemblies.fasta76 MB
  • FAUgibba-no-masked.fa98 MB
  • BOXugibba_nogs_emapper_annotations.box3.4 MB
  • TXTUgibba_GOstat.txt961 kB
  • GENEUgibba.gene46 MB
  • TXTUgibba_GAF.txt14 MB
  • PROTUrenif.prot19 MB
  • BOXugibba_frozen_cleaned-validated.box99 MB
  • STATSUrenif-PASA.stats2.9 kB
  • BOXugibba_frozen.box105 MB
  • ANNOTUrenif_annot.annot8.3 MB
  • FASTAUgibba_fasta.fasta12 MB
  • TXTUgibba_export.txt8.1 MB
  • GFF3Ugibba-EVM.all-no-TEs-PASA.gff373 MB
  • GFF3Ugibba-EVM.all-no-TEs-PASA-ANNOTATED.gff371 MB
  • CDSUgibba.CDS30 MB
  • TXTUr-duplicates.txt268 byte
  • BOXurenif_frozen_cleaned-validated.box169 MB
  • BOXurenif_frozen.box286 MB
  • CDNAUgibba.cDNA30 MB
  • ANNOTUgibba_annot-noclean.annot5.1 MB
  • ANNOTUgibba_annot.annot4.4 MB
  • —Ug.gene_type726 kB
  • TXTUg-duplicates.txt262 byte
  • —Ug.collinearity591 kB
  • TXTREADME.txt5.8 kB

DataHunter does not store or host these files: every link leads to the original source. Check the license there before using the data.

Search other datasets