DH{}DataHunter

Dataset from Zenodo · Pyron, Robert

TetrapodTrees Database: Anthropocene Imperilment of Ancient Diversity and Evolutionary Potential in Terrestrial Vertebrates

Open on Zenodo
License
CC BY 4.0commercial use allowedLicense text
This license allows commercial use. Usually you must credit the author; read the license for the exact terms.
Formats
CSV, R, ZIP, TRE
Size
6.8 GB
Updated
Sep 26, 2025

Description

Zenodo Readme – TetrapodTrees Database The data products here are described in the preprint "Anthropocene Imperilment of Ancient Diversity and Evolutionary Potential in Terrestrial Vertebrates." Figure tree - this is a single randomly chosen tree that was used for illustration purposes in the main MS and can be used for your own quick testing and analyses: tetrapoda 1.0 33281 full.1.tre Tetrapod trees – these files contain the full 10,000 trees with 33,281 species, broken up into 10 sets of 1,000 trees: tetrapoda 1.0 33281 full.1000.trees.zip tetrapoda 1.0 33281 full.2000.trees.zip tetrapoda 1.0 33281 full.3000.trees.zip tetrapoda 1.0 33281 full.4000.trees.zip tetrapoda 1.0 33281 full.5000.trees.zip tetrapoda 1.0 33281 full.6000.trees.zip tetrapoda 1.0 33281 full.7000.trees.zip tetrapoda 1.0 33281 full.8000.trees.zip tetrapoda 1.0 33281 full.9000.trees.zip tetrapoda 1.0 33281 full.10000.trees.zip Mammal trees – these 10,000 mammal trees were re-estimated using the methods described by Upham et al. (2019) with extinctionpr = fixed(0) to equal a Yule (i.e., pure-birth) process. These trees were used to create TetrapodTrees. MamPhy fullPosterior PureBirth vr…

Description from Zenodo, shortened.

Files (19)

  • CSVtrees.sample.csv355 kB
  • CSVmamm_tax.csv358 kB
  • CSVtetrapod_groups.csv989 kB
  • CSVtipRate_SUMMARY-ED_all10ktrees_tetrapoda_1.0_33281_full.csv7.9 MB
  • R_tetrapod_1.0.R22 kB
  • R_Tetrapoda_tipFP_forHPC_v2.R12 kB
  • ZIPtetrapoda_1.0_33281_full.5000.trees.zip614 MB
  • CSVtipRate_SUMMARY-DR_all10ktrees_tetrapoda_1.0_33281_full.csv8.4 MB
  • ZIPMamPhy_fullPosterior_PureBirth_vr_Completed_5911sp_topoCons_NDexp_all10k_v2_nexus.trees.zip774 MB
  • ZIPtetrapoda_1.0_33281_full.3000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.8000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.2000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.9000.trees.zip614 MB
  • TREtetrapoda_1.0_33281_full.1.tre1.5 MB
  • ZIPtetrapoda_1.0_33281_full.1000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.4000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.6000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.10000.trees.zip614 MB
  • ZIPtetrapoda_1.0_33281_full.7000.trees.zip614 MB

DataHunter does not store or host these files: every link leads to the original source. Check the license there before using the data.

Search other datasets