DH{}DataHunter

Dataset from Zenodo · Hall, Michael B.

Mycobacterium genus database

Open on Zenodo
License
CC0 1.0commercial use allowedLicense text
This license allows commercial use. Usually you must credit the author; read the license for the exact terms.
Formats
GZ, CSV, IDS
Size
533 MB
Updated
Feb 15, 2024

Description

The database is built as a Mycobacterium -specific one. For this database, we used genome updater.sh (v0.6.3; https://github.com/pirovc/genome updater) genome updater.sh -d "refseq" -g "bacteria" -T "g Mycobacterium" -f "genomic.fna.gz" -M "gtdb" -A 1 -m In addition, we added 17 high-quality M. tuberculosis genomes to this collection (from https://doi.org/10.1186/s13059-021-02474-0 - see mtb gramtools lineages.csv for the list of accessions). The mtb.ids file lists the sequence identifiers for those sequences in the database which are M. tuberculosis .

Description from Zenodo, shortened.

Files (3)

  • GZMycobacterium.rep.fna.gz533 MB
  • CSVmtb_gramtools_lineages.csv437 byte
  • IDSmtb.ids114 byte

DataHunter does not store or host these files: every link leads to the original source. Check the license there before using the data.

Search other datasets